CFAP99 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	3 studies	20% ± 5%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
adrenal gland	100%	241.78	258 / 258	23%	0.60	53 / 230
thymus	99%	101.37	646 / 653	21%	0.38	129 / 605
brain	94%	119.08	2487 / 2642	22%	0.66	153 / 705
kidney	100%	75.21	89 / 89	10%	0.16	89 / 901
pancreas	92%	35.49	303 / 328	5%	0.20	9 / 178
lung	82%	202.75	475 / 578	11%	0.25	126 / 1155
breast	46%	15.46	212 / 459	45%	1.00	501 / 1118
liver	66%	20.03	150 / 226	1%	0.02	5 / 406
uterus	38%	53.48	65 / 170	8%	0.24	38 / 459
stomach	40%	10.89	142 / 359	1%	0.02	4 / 286
prostate	34%	10.77	84 / 245	3%	0.06	17 / 502
ovary	13%	4.50	24 / 180	22%	0.56	96 / 430
intestine	26%	11.25	248 / 966	4%	0.08	23 / 527
peripheral blood	18%	4.88	164 / 929	0%	0	0 / 0
adipose	17%	4.64	207 / 1204	0%	0	0 / 0
spleen	14%	2.85	34 / 241	0%	0	0 / 0
esophagus	6%	1.66	92 / 1445	4%	0.08	8 / 183
skin	9%	1.90	154 / 1809	0%	0.01	2 / 472
bladder	5%	1.24	1 / 21	1%	0.07	7 / 504
blood vessel	5%	1.36	66 / 1335	0%	0	0 / 0
muscle	1%	0.67	12 / 803	0%	0	0 / 0
heart	1%	0.15	6 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1