CATSPERE report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	4 studies	21% ± 5%	Explore
oligodendrocyte	4 studies	26% ± 12%	Explore
astrocyte	3 studies	40% ± 16%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	31% ± 8%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	207.87	653 / 653	58%	0.94	350 / 605
breast	100%	112.86	459 / 459	37%	0.65	418 / 1118
ovary	100%	133.00	180 / 180	34%	0.56	145 / 430
skin	98%	74.89	1772 / 1809	28%	0.55	134 / 472
kidney	99%	122.73	88 / 89	25%	0.36	225 / 901
prostate	100%	120.84	245 / 245	23%	0.30	114 / 502
brain	99%	103.19	2624 / 2642	23%	0.36	163 / 705
adrenal gland	100%	117.03	257 / 258	21%	0.29	49 / 230
uterus	100%	93.86	170 / 170	19%	0.31	88 / 459
lung	98%	100.83	569 / 578	18%	0.32	206 / 1155
esophagus	97%	77.54	1401 / 1445	17%	0.27	32 / 183
liver	97%	66.12	220 / 226	13%	0.20	54 / 406
bladder	95%	92.24	20 / 21	12%	0.21	61 / 504
pancreas	95%	49.08	310 / 328	11%	0.17	20 / 178
stomach	97%	54.49	347 / 359	3%	0.06	10 / 286
spleen	100%	107.00	241 / 241	0%	0	0 / 0
adipose	100%	106.57	1199 / 1204	0%	0	0 / 0
intestine	96%	59.62	931 / 966	1%	0.02	7 / 527
blood vessel	97%	65.45	1299 / 1335	0%	0	0 / 0
muscle	94%	51.97	757 / 803	0%	0	0 / 0
heart	56%	19.30	484 / 861	0%	0	0 / 0
peripheral blood	19%	5.60	176 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	18%	0.40	14 / 80
tonsil	0%	0	0 / 0	2%	0.03	1 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1