CA11 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	9 studies	33% ± 19%	Explore
neuron	4 studies	23% ± 8%	Explore
retinal bipolar neuron	3 studies	35% ± 12%	Explore
retinal ganglion cell	3 studies	68% ± 21%	Explore
amacrine cell	3 studies	44% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	6 studies	27% ± 15%	Explore
eye	5 studies	21% ± 7%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	21797.82	2633 / 2642	100%	129.23	705 / 705
ovary	98%	4001.91	176 / 180	80%	21.25	344 / 430
uterus	69%	2476.54	117 / 170	75%	21.10	344 / 459
adrenal gland	38%	772.19	97 / 258	96%	100.24	220 / 230
thymus	22%	428.10	144 / 653	98%	77.10	594 / 605
prostate	29%	581.78	72 / 245	68%	11.61	340 / 502
skin	10%	171.04	173 / 1809	82%	19.96	386 / 472
kidney	10%	184.99	9 / 89	77%	15.65	691 / 901
tonsil	0%	0	0 / 0	82%	23.22	37 / 45
pancreas	0%	0	0 / 328	80%	15.17	142 / 178
esophagus	39%	878.31	557 / 1445	41%	7.25	75 / 183
lung	1%	22.57	7 / 578	73%	18.04	846 / 1155
lymph node	0%	0	0 / 0	59%	7.83	17 / 29
breast	12%	225.90	55 / 459	46%	12.44	517 / 1118
bladder	14%	232.90	3 / 21	41%	7.19	208 / 504
intestine	31%	675.49	303 / 966	18%	2.60	96 / 527
stomach	15%	299.19	54 / 359	19%	2.45	53 / 286
eye	0%	0	0 / 0	19%	3.38	15 / 80
liver	0%	0	0 / 226	14%	2.91	56 / 406
adipose	12%	301.03	144 / 1204	0%	0	0 / 0
blood vessel	4%	69.83	51 / 1335	0%	0	0 / 0
heart	1%	21.85	10 / 861	0%	0	0 / 0
muscle	0%	2.77	1 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1