C2CD2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	10 studies	28% ± 16%	Explore
adipocyte	9 studies	47% ± 15%	Explore
pericyte	7 studies	27% ± 14%	Explore
astrocyte	6 studies	29% ± 16%	Explore
retinal bipolar neuron	4 studies	22% ± 5%	Explore
retinal cone cell	4 studies	22% ± 3%	Explore
rod bipolar cell	3 studies	43% ± 6%	Explore
GABAergic neuron	3 studies	30% ± 14%	Explore
glutamatergic neuron	3 studies	38% ± 13%	Explore
fibroblast	3 studies	21% ± 7%	Explore
oligodendrocyte	3 studies	20% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	30% ± 7%	Explore
adipose	3 studies	19% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	4605.06	245 / 245	100%	22.00	502 / 502
esophagus	100%	2410.38	1445 / 1445	99%	13.85	182 / 183
intestine	100%	2777.93	964 / 966	99%	11.29	524 / 527
bladder	100%	3402.05	21 / 21	99%	16.80	500 / 504
thymus	100%	2470.49	652 / 653	99%	10.87	601 / 605
uterus	100%	2781.39	170 / 170	98%	13.98	450 / 459
stomach	100%	2423.01	358 / 359	98%	12.07	281 / 286
breast	100%	6155.17	459 / 459	97%	15.86	1089 / 1118
lung	99%	2222.91	571 / 578	98%	12.94	1130 / 1155
pancreas	97%	1503.59	319 / 328	98%	11.55	174 / 178
ovary	100%	4895.84	180 / 180	94%	9.10	403 / 430
kidney	97%	2062.48	86 / 89	96%	13.44	866 / 901
brain	85%	2082.87	2247 / 2642	99%	11.42	696 / 705
adrenal gland	100%	30544.69	258 / 258	75%	32.62	172 / 230
skin	100%	3652.52	1808 / 1809	70%	8.39	332 / 472
liver	86%	1040.26	194 / 226	74%	5.52	302 / 406
adipose	100%	7635.17	1204 / 1204	0%	0	0 / 0
spleen	100%	10069.49	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	6.05	1 / 1
blood vessel	100%	5493.77	1334 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	17.71	44 / 45
lymph node	0%	0	0 / 0	93%	6.90	27 / 29
heart	85%	1127.39	732 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	81%	7.23	65 / 80
peripheral blood	19%	504.24	178 / 929	0%	0	0 / 0
muscle	16%	153.12	126 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0