BEST4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	6 studies	30% ± 11%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	93%	59.73	167 / 180	89%	4.31	383 / 430
thymus	96%	72.47	627 / 653	80%	2.38	487 / 605
adrenal gland	100%	198.52	258 / 258	56%	1.36	128 / 230
uterus	96%	141.31	163 / 170	56%	1.70	259 / 459
brain	93%	191.24	2447 / 2642	48%	1.75	335 / 705
intestine	86%	1491.68	835 / 966	51%	1.56	267 / 527
lung	88%	214.45	509 / 578	48%	1.24	559 / 1155
kidney	74%	50.48	66 / 89	58%	2.57	520 / 901
bladder	71%	30.19	15 / 21	54%	1.44	272 / 504
pancreas	39%	14.68	129 / 328	64%	2.00	114 / 178
ureter	0%	0	0 / 0	100%	1.72	1 / 1
esophagus	65%	35.15	944 / 1445	34%	1.00	63 / 183
breast	71%	54.68	326 / 459	27%	0.59	305 / 1118
lymph node	0%	0	0 / 0	97%	2.94	28 / 29
spleen	92%	51.15	221 / 241	0%	0	0 / 0
prostate	83%	43.31	203 / 245	3%	0.05	16 / 502
skin	73%	76.39	1313 / 1809	10%	0.18	47 / 472
blood vessel	78%	48.09	1039 / 1335	0%	0	0 / 0
liver	52%	26.95	117 / 226	16%	0.36	65 / 406
stomach	21%	7.10	77 / 359	40%	1.11	115 / 286
adipose	57%	25.92	692 / 1204	0%	0	0 / 0
peripheral blood	56%	28.99	519 / 929	0%	0	0 / 0
heart	30%	11.09	262 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	18%	0.40	8 / 45
muscle	6%	2.74	52 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0