Name | Number of supported studies | Average coverage | |
---|---|---|---|
GABAergic neuron | 5 studies | 35% ± 18% | |
glutamatergic neuron | 5 studies | 42% ± 23% | |
endothelial cell | 4 studies | 20% ± 4% | |
oligodendrocyte precursor cell | 4 studies | 25% ± 10% | |
epithelial cell | 3 studies | 19% ± 2% | |
astrocyte | 3 studies | 32% ± 13% | |
interneuron | 3 studies | 49% ± 22% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 39% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1157.03 | 2639 / 2642 | 100% | 6.78 | 705 / 705 |
thymus | 100% | 754.96 | 653 / 653 | 100% | 5.43 | 604 / 605 |
prostate | 100% | 568.62 | 245 / 245 | 100% | 3.18 | 501 / 502 |
ovary | 100% | 815.84 | 180 / 180 | 99% | 4.01 | 424 / 430 |
breast | 100% | 490.07 | 459 / 459 | 98% | 3.47 | 1101 / 1118 |
lung | 100% | 471.15 | 576 / 578 | 99% | 3.72 | 1138 / 1155 |
kidney | 100% | 508.01 | 89 / 89 | 98% | 3.66 | 881 / 901 |
uterus | 100% | 739.44 | 170 / 170 | 98% | 3.43 | 448 / 459 |
esophagus | 100% | 485.53 | 1441 / 1445 | 98% | 3.31 | 179 / 183 |
pancreas | 98% | 303.09 | 322 / 328 | 98% | 3.22 | 175 / 178 |
adrenal gland | 100% | 481.67 | 258 / 258 | 93% | 3.73 | 215 / 230 |
skin | 100% | 502.40 | 1807 / 1809 | 93% | 2.72 | 437 / 472 |
bladder | 100% | 593.81 | 21 / 21 | 92% | 2.52 | 466 / 504 |
intestine | 100% | 637.83 | 966 / 966 | 88% | 2.03 | 463 / 527 |
stomach | 99% | 372.74 | 355 / 359 | 86% | 2.13 | 246 / 286 |
liver | 97% | 217.93 | 220 / 226 | 70% | 1.33 | 283 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 4.58 | 29 / 29 |
spleen | 100% | 670.24 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.25 | 1 / 1 |
blood vessel | 100% | 520.89 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 449.91 | 1201 / 1204 | 0% | 0 | 0 / 0 |
muscle | 99% | 456.99 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 433.45 | 838 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 2.62 | 43 / 45 |
eye | 0% | 0 | 0 / 0 | 89% | 2.46 | 71 / 80 |
peripheral blood | 80% | 249.50 | 746 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0008104 | Biological process | protein localization |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0006605 | Biological process | protein targeting |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0030124 | Cellular component | AP-4 adaptor complex |
GO_0031904 | Cellular component | endosome lumen |
Gene name | AP4S1 |
Protein name | AP-4 complex subunit sigma-1 AP-4 complex subunit sigma-1 (AP-4 adaptor complex subunit sigma-1) (Adaptor-related protein complex 4 subunit sigma-1) (Sigma-1 subunit of AP-4) (Sigma-4-adaptin) (Sigma4-adaptin) Adaptor related protein complex 4 subunit sigma 1 AP complex subunit sigma |
Synonyms | hCG_2013646 |
Description | FUNCTION: Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways . AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asymmetric localization of somatodendritic proteins in neurons. AP-4 is involved in the recognition and binding of tyrosine-based sorting signals found in the cytoplasmic part of cargos, but may also recognize other types of sorting signal (Probable). . |
Accessions | A0A8C8KBR5 ENST00000557346.6 [Q9Y587-1] A0A5F9ZI62 ENST00000542754.7 [Q9Y587-1] G3V4P7 ENST00000673001.1 ENST00000557346 ENST00000554609.6 [Q9Y587-3] ENST00000556232.6 ENST00000555417.6 [Q9Y587-1] ENST00000554345.6 [Q9Y587-2] A0A5F9ZHV3 ENST00000313566.11 ENST00000673317.1 ENST00000555417 A0A8C8KCP6 ENST00000672143.1 Q9Y587 ENST00000554609 A0A0G2JL90 ENST00000334725.8 [Q9Y587-4] A0A5F9ZH42 G3V3X7 ENST00000216366.9 G3V5J6 |