Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 33 studies | 48% ± 23% | |
adipocyte | 10 studies | 63% ± 15% | |
smooth muscle cell | 6 studies | 34% ± 12% | |
connective tissue cell | 6 studies | 46% ± 10% | |
hepatocyte | 5 studies | 72% ± 26% | |
pericyte | 5 studies | 19% ± 3% | |
adventitial cell | 5 studies | 73% ± 17% | |
mesothelial cell | 5 studies | 55% ± 16% | |
myofibroblast cell | 5 studies | 51% ± 18% | |
endothelial cell | 5 studies | 27% ± 12% | |
cholangiocyte | 3 studies | 46% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 96% | 119179.07 | 218 / 226 | 94% | 353.30 | 383 / 406 |
breast | 98% | 105119.39 | 450 / 459 | 55% | 13.55 | 616 / 1118 |
lung | 96% | 44005.39 | 557 / 578 | 56% | 9.50 | 643 / 1155 |
intestine | 90% | 25372.13 | 871 / 966 | 24% | 3.33 | 127 / 527 |
bladder | 90% | 33309.86 | 19 / 21 | 23% | 2.50 | 114 / 504 |
adrenal gland | 67% | 10973.65 | 172 / 258 | 42% | 6.68 | 96 / 230 |
esophagus | 81% | 17902.99 | 1168 / 1445 | 22% | 2.04 | 40 / 183 |
adipose | 100% | 141268.91 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 95% | 55582.95 | 1264 / 1335 | 0% | 0 | 0 / 0 |
uterus | 79% | 23852.08 | 135 / 170 | 5% | 0.81 | 22 / 459 |
stomach | 49% | 12638.83 | 176 / 359 | 31% | 4.22 | 90 / 286 |
pancreas | 5% | 575.31 | 17 / 328 | 72% | 12.55 | 128 / 178 |
thymus | 55% | 10439.06 | 360 / 653 | 19% | 2.80 | 113 / 605 |
skin | 59% | 15510.57 | 1063 / 1809 | 14% | 0.94 | 66 / 472 |
ovary | 50% | 13005.68 | 90 / 180 | 20% | 2.10 | 87 / 430 |
kidney | 29% | 6188.93 | 26 / 89 | 35% | 3.91 | 319 / 901 |
heart | 49% | 10401.27 | 425 / 861 | 0% | 0 | 0 / 0 |
spleen | 44% | 6368.15 | 107 / 241 | 0% | 0 | 0 / 0 |
prostate | 10% | 2045.99 | 25 / 245 | 12% | 0.48 | 60 / 502 |
muscle | 16% | 2168.60 | 126 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 14% | 0.52 | 4 / 29 |
tonsil | 0% | 0 | 0 / 0 | 4% | 0.10 | 2 / 45 |
brain | 0% | 4.29 | 1 / 2642 | 1% | 0.05 | 10 / 705 |
peripheral blood | 0% | 80.58 | 4 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001523 | Biological process | retinoid metabolic process |
GO_0042573 | Biological process | retinoic acid metabolic process |
GO_0042572 | Biological process | retinol metabolic process |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0004024 | Molecular function | alcohol dehydrogenase (NAD+) activity, zinc-dependent |
GO_0004022 | Molecular function | alcohol dehydrogenase (NAD+) activity |
GO_0004745 | Molecular function | all-trans-retinol dehydrogenase (NAD+) activity |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | ADH1B |
Protein name | All-trans-retinol dehydrogenase [NAD(+)] ADH1B All-trans-retinol dehydrogenase [NAD(+)] ADH1B (EC 1.1.1.105) (Alcohol dehydrogenase 1B) (Alcohol dehydrogenase subunit beta) |
Synonyms | ADH2 |
Description | FUNCTION: Catalyzes the NAD-dependent oxidation of all-trans-retinol and its derivatives such as all-trans-4-hydroxyretinol and may participate in retinoid metabolism . In vitro can also catalyzes the NADH-dependent reduction of all-trans-retinal and its derivatives such as all-trans-4-oxoretinal . Catalyzes in the oxidative direction with higher efficiency . Has the same affinity for all-trans-4-hydroxyretinol and all-trans-4-oxoretinal . . |
Accessions | P00325 D6RHZ6 ENST00000506651.5 [P00325-2] ENST00000625860 ENST00000506651 ENST00000305046.13 [P00325-1] ENST00000625860.2 [P00325-2] |