ABCA9 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	17 studies	37% ± 16%	Explore
endothelial cell	7 studies	24% ± 8%	Explore
adipocyte	5 studies	33% ± 10%	Explore
macrophage	4 studies	36% ± 12%	Explore
hepatocyte	3 studies	37% ± 11%	Explore
GABAergic neuron	3 studies	52% ± 5%	Explore
glutamatergic neuron	3 studies	55% ± 9%	Explore
smooth muscle cell	3 studies	56% ± 28%	Explore
adventitial cell	3 studies	37% ± 18%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	41% ± 10%	Explore
adipose	3 studies	24% ± 8%	Explore
heart	3 studies	20% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	7790.33	458 / 459	51%	1.66	565 / 1118
liver	78%	1840.88	177 / 226	53%	1.44	215 / 406
lung	86%	2867.00	497 / 578	35%	0.74	400 / 1155
bladder	90%	3392.29	19 / 21	25%	0.73	126 / 504
skin	73%	2638.32	1326 / 1809	42%	2.28	198 / 472
ovary	100%	8241.51	180 / 180	14%	0.31	60 / 430
thymus	95%	3868.76	621 / 653	14%	0.24	84 / 605
uterus	90%	4224.30	153 / 170	14%	0.49	63 / 459
esophagus	81%	4403.35	1170 / 1445	22%	0.62	40 / 183
adipose	100%	10948.05	1201 / 1204	0%	0	0 / 0
heart	96%	4439.63	828 / 861	0%	0	0 / 0
intestine	83%	3091.71	801 / 966	13%	0.41	67 / 527
muscle	90%	2447.43	721 / 803	0%	0	0 / 0
adrenal gland	50%	857.94	130 / 258	37%	0.79	86 / 230
pancreas	15%	224.05	50 / 328	71%	2.30	127 / 178
blood vessel	77%	2542.02	1024 / 1335	0%	0	0 / 0
brain	26%	352.65	674 / 2642	47%	1.07	332 / 705
stomach	50%	2073.22	178 / 359	22%	0.65	62 / 286
prostate	43%	830.61	106 / 245	16%	0.25	82 / 502
lymph node	0%	0	0 / 0	45%	1.43	13 / 29
kidney	21%	383.93	19 / 89	21%	0.58	191 / 901
eye	0%	0	0 / 0	25%	0.61	20 / 80
spleen	8%	106.15	19 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	7%	0.09	3 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1