From raw multi-omics data to publication-ready insights

OmnibusX is the unified, no‑code platform for academic labs and pharma R&D teams analyzing
scRNAseq, scATAC‑seq, bulk RNAseq, and spatial transcriptomics data.

OmnibusX Multi-omics Data AnalysisStart your free 2-month trial

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Trusted by researchers worldwide

OmnibusX is supporting scientists across academia and industry to accelerate their discoveries.

Trusted by 5+ pharma and biotech teams

5+

Pharma and biotech teams

Trusted by 30+ academic labs

30+

Academic labs

Trusted by 100+ researchers

100+

Researchers

Trusted by 10+ countries

10+

Countries

Juggling multiple tools, coding complex pipelines,
and waiting weeks for results?

OmnibusX streamlines your single‑cell and multi‑omics analysis into one elegant platform.

Support diverse multi‑omics formats

Import data in diverse formats such as .tsv, .csv, .h5, .h5ad, .rds, .bed, .png, .tiff, .json, .zip, etc.

Centralized data workspace

Keep all your datasets organized and accessible in one place, no switching between tools or managing scattered files.

Tailored pipelines for each omics type

Each omics type has its own carefully designed workflow, built on established best practices from the field.

Comprehensive standard analyses

Perform standard and advanced analyses for scRNA‑seq, scATAC‑seq, bulk RNA‑seq, and spatial transcriptomics data.

Interactive visual exploration

Explore UMAP, t-SNE, find marker genes, annotate data, and analysis results through intuitive, elegant visualizations.

Publication‑ready figures

Edit and export high‑quality figures directly in OmnibusX, tailored for journal submission requirements.

Comprehensive multi‑omics analysis, all-in-one platform

Analyze scRNAseq, scATACseq, spatial transcriptomics, and bulk RNA‑seq data in a single, integrated environment.
From clustering and batch correction to cell type prediction, TCR/BCR analysis, genome browsing, and advanced visualizations.
OmnibusX puts publication‑ready insights at your fingertips.

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OmnibusX - visium HD, spatial transcriptomics
OmnibusX - genome browser, chromatin accessibility, scATAC-seq, multi-omics
OmnibusX - differential chromatin accessibility, scATAC-seq, multi-omics
OmnibusX - single-cell analysis
OmnibusX - composition analysis for categorical metadata
OmnibusX - composition analysis for numerical metadata
OmnibusX - composition analysis for groups
OmnibusX - visualize gene expression with violin plot
OmnibusX - visualize gene expression with box plot
OmnibusX - visualize gene expression with bar plot
OmnibusX - visualize gene expression with bubble plot
OmnibusX - differential expression genes
OmnibusX - differential enrichment analysis
OmnibusX - DEGs heatmap
OmnibusX - enrichment analysis with ANOVA test
OmnibusX - enrichment analysis with ANOVA test
OmnibusX - enrichment analysis heatmap
OmnibusX - cell type markers heatmap
OmnibusX - cell-cell interaction
OmnibusX - GeoMx DSP, spatial transcriptomics
OmnibusX - TCR/BCR analysis diversity analysis
OmnibusX - TCR/BCR analysis overlapped repertoire analysis
OmnibusX - TCR/BCR analysis spectratype consensus sequence
OmnibusX - pseudotime trajectory analysis
OmnibusX - pseudotime cell-state density analysis
OmnibusX - pseudotime fate-probability analysis
OmnibusX - pseudotime gene trend analysis heatmap

Effortless plot creation and customization

With intuitive interface, you can quickly generate and customize plots to fit your needs, create clear, publication-ready visuals in seconds without any coding. We supports a wide range of chart types, from classic to modern, and simple to complex, including bar plot, box plot, violin plot, line plot, scatter plot, histogram, composition chart, bubble plot, and more.

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Explore our curated multi‑omics database

Free access

An online gateway to standardized, analysis‑ready multi‑omics datasets,
designed for hypothesis generation, benchmarking, and uncovering deeper biological insights

1,952

publications

31,641

bulk samples

390,987,562

single-cells

1,040

spatial slides

Explore genes, cell Types, and gene Ontologies

OmnibusX offers a suite of free search tools designed to help scientists rapidly explore public multi-omics data.
Whether you're starting a new project or validating a hypothesis, these tools accelerate discovery and help you quickly find answers.

Search genes

Explore the expression patterns of genes across diverse cell types and tissues to deepen your understanding
and enhance the analysis of your specific gene targets.

Explore

Search cell types

Discover the characteristics of cell types and subtypes, as annotated by the scientific community, to broaden
your understanding of your cell type of interest.

Explore

Search gene ontology

Gain insights into gene functions within specific cellular contexts and their interactions with various cell types,
providing a deeper understanding of biological processes.

Explore

Need help with complex analyses?

Our scientists provide tailored pipelines and deep‑dive analyses for your projects.

Learn more about our services

Exceptional support, built into the OmnibusX experience

High‑quality, responsive support designed to accelerate your research.

OmnibusX - Seamless onboarding

Seamless onboarding

Get help formatting and submitting your data so you can start analyzing immediately.

OmnibusX - Fast, expert responses

Fast, expert responses

Direct, timely replies via email or scheduled calls with experts who
understand your research.

OmnibusX - Your reedback shapes the platform

Your reedback shapes the platform

Feature requests are reviewed for feasibility and impact. High‑value ideas are added to our roadmap, others can be explored through our bioinformatics services, often with a free proof‑of‑concept.

OmnibusX isn’t just software, it’s a partnership to help you move your research forward

Ready to Accelerate Your Research?

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Accelerate Your Research with OmnibusX